Package: SangerTools 1.0.3

SangerTools: Tools for Population Health Management Analytics

Created for population health analytics and monitoring. The functions in this package work best when working with patient level Master Patient Index-like datasets . Built to be used by NHS bodies and other health service providers.

Authors:Asif Laldin [aut, cre], Gary Hutson [aut]

SangerTools_1.0.3.tar.gz
SangerTools_1.0.3.zip(r-4.7)SangerTools_1.0.3.zip(r-4.6)SangerTools_1.0.3.zip(r-4.5)
SangerTools_1.0.3.tgz(r-4.6-any)SangerTools_1.0.3.tgz(r-4.5-any)
SangerTools_1.0.3.tar.gz(r-4.7-any)SangerTools_1.0.3.tar.gz(r-4.6-any)
SangerTools_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SangerTools/json (API)

# Install 'SangerTools' in R:
install.packages('SangerTools', repos = c('https://ald0405.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ald0405/sangertools/issues

Datasets:

On CRAN:

Conda:

nhsnhs-r-communitypopulation-healthprevalence

5.39 score 5 stars 49 scripts 241 downloads 16 exports 61 dependencies

Last updated from:7e54b5a8a0. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK180
source / vignettesOK220
linux-release-x86_64OK205
macos-release-arm64OK158
macos-oldrel-arm64OK140
windows-develOK108
windows-releaseOK104
windows-oldrelOK126
wasm-releaseOK122

Exports:%>%age_bandizerage_bandizer_2categorical_col_chartcohort_processingcrude_ratesdf_to_sqlexcel_clipmultiple_csv_readermultiple_excel_readerscale_fill_sangershow_brand_paletteshow_extended_palettesplit_and_savestandardised_rates_dftheme_sanger

Dependencies:bitbit64blobcellrangerclicliprcommonmarkcpp11crayoncurlDBIdplyrfarvergenericsggplot2ggtextggthemesgluegridtextgtablehmsisobandjanitorjpeglabelinglifecyclelitedownlubridatemagrittrmarkdownodbcpillarpkgconfigpngprettyunitsprogresspurrrR6RColorBrewerRcppreadrreadxlrematchrlangS7scalessnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsviridisLitevroomwithrxfunxml2

Demo: Data and Functions
Bundled datasets | PopHealthData | master_patient_index | uk_pop_standard | Function gallery | Wrangling | age_bandizer() — fixed 5-year bands | age_bandizer_2() — configurable band width | cohort_processing() and split_and_save() | Analytics | crude_rates() | standardised_rates_df() | Charts and theming | categorical_col_chart() + theme_sanger() + scale_fill_sanger() | Palette previews | I/O | excel_clip() | df_to_sql() | multiple_csv_reader() / multiple_excel_reader() | Putting it together
Rendered fromdemo-data-and-functions.Rmdusingknitr::rmarkdown

Last update: 2026-05-21
Started: 2026-05-21

SangerTools Vignette
Welcome to the SangerTools package | Loading in Health Data | Age bands | Generating a categorical column chart easily | Crude Prevalence | Age Standardised Rates | Age Standardised Rates with User Defined Population Structure | Load 2018 UK Population Structure | UK Age Standardised Diabetes Prevalence | Combining Results | Excel Clipboard function | Multiple CSV reader | Splitting Dataframes and Saving | Results to SQL | See Brand Colours | See More Colours | Closing
Rendered fromSangerTools_Vignette.Rmdusingknitr::rmarkdown

Last update: 2022-02-20
Started: 2021-12-24