Package: SangerTools 1.0.2

SangerTools: Tools for Population Health Management Analytics

Created for population health analytics and monitoring. The functions in this package work best when working with patient level Master Patient Index-like datasets . Built to be used by NHS bodies and other health service providers.

Authors:Asif Laldin [aut, cre], Gary Hutson [aut]

SangerTools_1.0.2.tar.gz
SangerTools_1.0.2.zip(r-4.5)SangerTools_1.0.2.zip(r-4.4)SangerTools_1.0.2.zip(r-4.3)
SangerTools_1.0.2.tgz(r-4.5-any)SangerTools_1.0.2.tgz(r-4.4-any)SangerTools_1.0.2.tgz(r-4.3-any)
SangerTools_1.0.2.tar.gz(r-4.5-noble)SangerTools_1.0.2.tar.gz(r-4.4-noble)
SangerTools_1.0.2.tgz(r-4.4-emscripten)SangerTools_1.0.2.tgz(r-4.3-emscripten)
SangerTools.pdf |SangerTools.html✨
SangerTools/json (API)
NEWS

# Install 'SangerTools' in R:

install.packages('SangerTools', repos = c('https://ald0405.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ald0405/sangertools/issues

Datasets:

PopHealthData - PopHealthData - Population health data for testing functions
master_patient_index - Master Patient Index
uk_pop_standard - Data set of 2018 UK Population

On CRAN:

nhs nhs-r-community population-health prevalence

5.05 score 5 stars 45 scripts 242 downloads 16 exports 67 dependencies

Last updated 1 years agofrom:18ca9e168c. Checks:8 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 12 2025
R-4.5-win	OK	Feb 12 2025
R-4.5-mac	OK	Feb 12 2025
R-4.5-linux	OK	Feb 12 2025
R-4.4-win	OK	Feb 12 2025
R-4.4-mac	OK	Feb 12 2025
R-4.3-win	OK	Feb 12 2025
R-4.3-mac	OK	Feb 12 2025

Exports:%>%age_bandizer age_bandizer_2 categorical_col_chart cohort_processing crude_rates df_to_sql excel_clip multiple_csv_reader multiple_excel_reader scale_fill_sanger show_brand_palette show_extended_palette split_and_save standardised_rates_df theme_sanger

Dependencies:bit bit64 blob cellranger cli clipr colorspace commonmark cpp11 crayon curl DBI dplyr fansi farver generics ggplot2 ggtext ggthemes glue gridtext gtable hms isoband janitor jpeg labeling lattice lifecycle lubridate magrittr markdown MASS Matrix mgcv munsell nlme odbc pillar pkgconfig png prettyunits progress purrr R6 RColorBrewer Rcpp readr readxl rematch rlang scales snakecase stringi stringr tibble tidyr tidyselect timechange tzdb utf8 vctrs viridisLite vroom withr xfun xml2

SangerTools Vignette

Rendered fromSangerTools_Vignette.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2022-02-20
Started: 2021-12-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Age Band Creation: Create a new column of 5 year Age Bands from an integer column	age_bandizer
Create age bands from a numerical column	age_bandizer_2
Plot Counts of Categorical Variables	categorical_col_chart
Patient Cohort Re-Identification Processing	cohort_processing
Crude Prevalence Calculator	crude_rates
Dataframe to SQL	df_to_sql
Dataframe or Tibble to Clipboard	excel_clip
Master Patient Index	master_patient_index
Read Multiple CSV files into R	multiple_csv_reader
Read Multiple Excel files into R	multiple_excel_reader
PopHealthData - Population health data for testing functions	PopHealthData
Branded discrete colour scale	scale_fill_sanger
Brand Colour Palette	show_brand_palette
Extended Brand Colour Palette	show_extended_palette
Split & Save	split_and_save
Standardised Prevalence Rates.	standardised_rates_df
Customised ggplot2 Theme	theme_sanger
Data set of 2018 UK Population	uk_pop_standard